Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs73127086 chr12:63415626 G/A 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs73128779 chr12:63441852 T/G 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs73128794 chr12:63445313 C/T 1.82E-7 101 15.3 14.3 8.8 KM Plot
SKCM rs73574169 chr19:48673304 T/G 6.73E-5 101 15.38 14.8 11.73 KM Plot
SKCM rs737153 chr6:135171263 A/C 2.44E-5 96 15.73 13.48 11.73 KM Plot
SKCM rs7388487 chr8:143447503 C/T 7.21E-5 100 15.38 15.57 10.87 KM Plot
SKCM rs7443550 chr5:578404 G/T 0 99 15.02 13.4 6.33 KM Plot
SKCM rs750621 chr19:48687447 G/T 6.35E-5 98 15.38 14.7 11.73 KM Plot
SKCM rs7525476 chr1:3535550 G/A 4.08E-8 97 16.33 14.9 8.8 KM Plot
SKCM rs7538796 chr1:3535557 A/G 4.08E-8 97 16.33 14.9 8.8 KM Plot
SKCM rs754380 chr19:48686931 G/T 7.8E-5 100 15.13 14.8 11.73 KM Plot
SKCM rs7607337 chr2:122539735 A/G 2.4E-5 101 15.6 14.45 9 KM Plot
SKCM rs76759293 chr13:106573861 T/C 3.5E-5 99 15.47 13.63 4.73 KM Plot
SKCM rs7733335 chr5:127905 C/T 2.07E-5 101 14.7 15.75 9.32 KM Plot
SKCM rs78161283 chr4:119792345 C/T 0 100 14.85 13.73 6.33 KM Plot